Gh485, Gh485 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh485
Genbank IDDQ908424
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908424
Source Typegenomic
Repeat MotifAGA(14)
Primer 1Gh485_F: ATATGCAGGCAAAAACACGTGCAC
Primer 2Gh485_R: TTAAGTCTACTGCCAGCATGGATC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908424
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:57902403..57902533 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:96965685..96965796 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_12chromosomeD5_12:5279175..5279286 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:49432871..49432979 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold2688.1supercontigscaffold2688.1:43484..43595 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:54366114..54366244 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:82322253..82322364 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:56805805..56805935 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:101584046..101584157 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:56093345..56093475 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:101852470..101852581 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:56885252..56885382 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:99728790..99728901 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:55056249..55056379 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:96652090..96652201 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:57727076..57727178 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold47922supercontigscaffold47922:6354..6456 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:53407978..53408080 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:96613752..96613854 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017634.1chromosomeCM017634.1:55119982..55120090 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:58069932..58070046 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:100783432..100783540 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D12chromosomeD12:57275466..57275596 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:103265120..103265231 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:104292554..104292662 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:52459800..52459911 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr08chromosomechr08:40898203..40898491 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:39050079..39050187 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:54394126..54394234 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:38012528..38013024 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:38012689..38012812 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:36377492..36377829 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908424DQ908424Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A116.5GH485View
Sequence
>Gh485 ID=Gh485; Name=Gh485; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
ATATGCAGGCAAAAACACGTGCACACGTGTGCATGCAGACACAGAGACAG
AGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACC
TCCAATGGATCCATGCTGGCAGTAGACTTAA