Gh480, Gh480 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh480
Genbank IDDQ908419
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908419
Source Typegenomic
Repeat MotifTCT(14)
Primer 1Gh480_F: CTTTTATCTTTTCTGGGATAGCTTGG
Primer 2Gh480_R: CAATAGTTTAAGGCTCTGGTTAAGAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908419
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:9357212..9357324 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:8601283..8601401 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:42401954..42402083 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold71.1supercontigscaffold71.1:2052432..2052547 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:8521028..8521143 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:9189966..9190081 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:8978022..8978137 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:9089769..9089881 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:8505785..8505900 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt04chromosomeDt04:9286707..9286831 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1869supercontigscaffold1869:453485..453609 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:8670576..8670697 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:8639081..8639199 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:8737405..8737520 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:8964080..8964214 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:8666248..8666378 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:9568250..9568365 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:42153102..42153218 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:5753277..5753434 -Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908419DQ908419Gossypium hirsutumsequence_feature


Sequence
>Gh480 ID=Gh480; Name=Gh480; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
CTTTTATCTTTTCTGGGATAGCTTGGGGGCAACATGAGTATTCCTTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTACTCTTAACCA
GAGCCTTAAACTATTG