Gh468, Gh468 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh468
Genbank IDDQ908407
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908407
Source Typegenomic
Repeat MotifAGA(9)
Primer 1Gh468_F: TGCTTGAAAATTGAGAAGAATTGCGAG
Primer 2Gh468_R: GTAGCTGCTTTGTTTATCGCCTTTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908407
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:1584239..1584332 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:95278064..95278196 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold743.1supercontigscaffold743.1:424985..425078 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:1455212..1455305 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:1436945..1437038 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:1501770..1501863 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:1434558..1434651 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:961174..961267 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1811supercontigscaffold1811:136448..136541 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:1634996..1635089 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:1488351..1488444 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:1663814..1663904 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:1759577..1759670 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:1780940..1781033 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:1507532..1507625 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:93197580..93197700 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:97543776..97543908 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908407DQ908407Gossypium hirsutumsequence_feature


Sequence
>Gh468 ID=Gh468; Name=Gh468; organism=Gossypium hirsutum; type=genetic_marker; length=94bp
TGCTTGAAAATTGAGAAGAATTGCGAGAAAAGGAGGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAGAAAACAAAGGCGATAAACAAAGCAGCTAC