Gh461, Gh461 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh461
Genbank IDDQ908400
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908400
Source Typegenomic
Repeat MotifAG(12)
Primer 1Gh461_F: CGACCAAACCTTAAACAATGAAATGAG
Primer 2Gh461_R: CACCTCCTATTTTTCTTTGACTGAAAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908400
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:20436178..20436315 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:18380167..18380298 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:33026677..33026808 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr12chromosomeDt_chr12:33383907..33384044 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:18704233..18704370 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:19201586..19201723 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:18897716..18897853 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:19239265..19239402 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:18654330..18654467 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4776supercontigscaffold4776:155247..155378 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:18488846..18488977 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:18292557..18292688 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:18606538..18606677 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:19333499..19333630 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:18400812..18400943 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:19719245..19719382 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:32736920..32737051 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:18585128..18585259 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908400DQ908400Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A77.1GH461View
Sequence
>Gh461 ID=Gh461; Name=Gh461; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
CGACCAAACCTTAAACAATGAAATGAGATAGTTCTCAATTCAAAAGGAAA
AATAAAATAATACCAGGTAAGAATCAAAGCAAAGAGAGAGAGAGAGAGAG
AGAGAGGAGAACTTTCAGTCAAAGAAAAATAGGAGGTG