Gh455, Gh455 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh455
Genbank IDDQ908394
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908394
Source Typegenomic
Repeat MotifTCT(15)
Primer 1Gh455_F: GGCTTAGTTTTCTCTAGGTTTTCTC
Primer 2Gh455_R: CAACTAAAGAAATGAAAATGAAGAACCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908394
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:50945273..50945394 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_08chromosomeD5_08:43772258..43772383 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr10chromosomeDt_chr10:11277375..11277496 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:47346379..47346500 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:109020352..109020426 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D08chromosomeGhir_D08:50191318..50191438 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:51121352..51121473 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:50083507..50083628 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:47373253..47373392 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At06chromosomeAt06:85874602..85874676 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1472supercontigscaffold1472:535656..535756 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:47550527..47550627 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017630.1chromosomeCM017630.1:49046238..49046368 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:50884617..50884729 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D08chromosomeD08:50686022..50686143 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:44657561..44657686 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeGh455:1..503 .
Chr04:44425100..44425606 -		n/a
Chr4chromosomeGh455:1..503 .
Chr4:4409185..4409691 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908394DQ908394Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A51.6Gh455bView
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A27.5Gh455View
Sequence
>Gh455 ID=Gh455; Name=Gh455; organism=Gossypium hirsutum; type=genetic_marker; length=122bp
GGCTTAGTTTTCTCTAGGTTTTCTCTTAGATTTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTTTTATAGGGTTC
TTCATTTTCATTTCTTTAGTTG