Gh452, Gh452 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh452
Genbank IDDQ908391
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908391
Source Typegenomic
Repeat MotifAG(9)
Primer 1Gh452_F: AAGACATGTTTGTCATTTGGCAACC
Primer 2Gh452_R: TATTCTCATGCACCTACTTTTCAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908391
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:10421595..10421696 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:11592135..11592228 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:9836342..9836452 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:11270492..11270589 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:9464831..9464959 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:12803827..12803916 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:52766478..52766591 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:128279106..128279215 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr4chromosomeAt_chr4:89024633..89024726 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr4chromosomeDt_chr4:27290986..27291088 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:9788281..9788374 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold6732supercontigscaffold6732:670..763 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:9838372..9838473 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:11570264..11570357 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:9440729..9440831 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:11303827..11303920 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:9283383..9283485 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:11689642..11689735 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:9921283..9921385 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:11451125..11451218 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8776supercontigscaffold8776:18924..19021 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold102supercontigscaffold102:25558..25661 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:9973992..9974100 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:11647789..11647886 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:10042330..10042582 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:11336824..11336921 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:10086232..10086336 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:11708371..11708466 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:10467739..10467864 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017656.1chromosomeCM017656.1:10435191..10435318 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:9906134..9906241 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:11464651..11464746 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:10023857..10023958 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:12132806..12132899 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:12577518..12577607 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:12915311..12915400 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:9382443..9382559 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:9872241..9872361 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_04chromosomeChr_04:7791302..7791417 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:9670600..9670694 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:6465498..6465595 +Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908391DQ908391Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A67.1Gh452View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A19.5Gh452View
Sequence
>Gh452 ID=Gh452; Name=Gh452; organism=Gossypium hirsutum; type=genetic_marker; length=102bp
AAGACATGTTTGTCATTTGGCAACCGGAGCAAGAAAGGAAAGAGAGAGAG
AGAGAGAGAAGGGGGGGGGGGCAATTTGCTGAAAAGTAGGTGCATGAGAA
TA