Gh439, Gh439 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh439
Genbank IDDQ908378
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908378
Source Typegenomic
Repeat MotifTC(6)
Primer 1Gh439_F: TTTAGCCTCTTGTCTGTTACCACC
Primer 2Gh439_R: GAGATTAGAGCTTGAAAGTGAGGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908378
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:7588381..7588448 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:7133904..7133971 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:55292861..55292928 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:57061114..57061181 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:2467098..2467165 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold10465supercontigscaffold10465:3839..3906 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:7657102..7657169 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:7265626..7265693 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:7506258..7506325 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:7614902..7614969 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:7466053..7466120 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15464supercontigscaffold15464:35775..35842 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:7216264..7216331 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:7272469..7272536 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:7173151..7173218 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:7376154..7376221 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:7357090..7357157 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:7507431..7507498 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:7105382..7105449 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:7028448..7028516 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:6673227..6673294 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:5637900..5637967 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:7274260..7274331 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:6235040..6235107 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:5025038..5025107 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:6254697..6254764 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr11chromosomeGh439:1..654 .
Chr11:7036171..7036806 -		n/a
Chr11chromosomeGh439:1..654 .
Chr11:9287670..9288305 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908378DQ908378Gossypium hirsutumsequence_feature


Sequence
>Gh439 ID=Gh439; Name=Gh439; organism=Gossypium hirsutum; type=genetic_marker; length=68bp
TTTAGCCTCTTGTCTGTTACCACCTCTCTCTCTCTCTTTTTTTCCCCTCA
CTTTCAAGCTCTAATCTC