Gh437, Gh437 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh437
Genbank IDDQ908376
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908376
Source Typegenomic
Repeat MotifTC(5)
Primer 1Gh437_F: ATCGTGTTTTGCTTGACCAACCTC
Primer 2Gh437_R: ATTCGGCTAACAAGGGAGGTAAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908376
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:89862917..89863039 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:92743960..92744082 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:87940290..87940412 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:64048008..64048130 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:81668647..81668769 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:98930408..98930530 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:100345302..100345424 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:98917201..98917323 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:96936004..96936126 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:82457714..82457836 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At05chromosomeAt05:82452205..82452327 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2201supercontigscaffold2201:205807..205929 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2201supercontigscaffold2201:200298..200420 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:92733323..92733445 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:97768515..97768637 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:94628327..94628449 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:103183460..103183582 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:95594604..95594726 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:100471856..100471978 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:10912776..10912898 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:10701987..10702109 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:70008272..70008395 -Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908376DQ908376Gossypium hirsutumsequence_feature


Sequence
>Gh437 ID=Gh437; Name=Gh437; organism=Gossypium hirsutum; type=genetic_marker; length=123bp
ATCGTGTTTTGCTTGACCAACCTCTTTTCTCTCTCTCACTTTTCTACTTA
AAGTAATTAGTGCTTTGCCTTTACTTATTTTTGGTTTTGGGTAGCCGAAG
TTTACCTCCCTTGTTAGCCGAAT