Gh432, Gh432 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh432
Genbank IDDQ908371
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908371
Source Typegenomic
Repeat MotifAG(12)
Primer 1Gh432_F: CCTAGTTCATAATTCCTGATTTGTGTC
Primer 2Gh432_R: CAACCACCTGCAATATAAGAGCAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908371
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:31129103..31129233 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:29576083..29576208 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:28259786..28259911 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:24806492..24806618 +Gossypioides kirkii genome ISU_v3n/a
D10_05chromosomeD10_05:32246752..32246877 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:64597134..64597339 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:34770530..34770660 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:30348390..30348520 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:30489498..30489628 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:29727731..29727861 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:30316463..30316593 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:29940480..29940610 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:31878197..31878322 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5846supercontigscaffold5846:76789..76914 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3839supercontigscaffold3839:68..193 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:30145338..30145463 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:29877309..29877434 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:29906794..29906924 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:30306115..30306240 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:29968715..29968840 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:31000662..31000792 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:28407199..28407324 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:49685108..49685316 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:28879037..28879160 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:25379906..25380033 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:24403587..24403712 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:30097463..30097588 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:23238537..23238666 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:20569259..20569386 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:23556355..23556484 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr05chromosomeChr05:81064099..81064302 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908371DQ908371Gossypium hirsutumsequence_feature


Sequence
>Gh432 ID=Gh432; Name=Gh432; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
CCTAGTTCATAATTCCTGATTTGTGTCAGAGAGAGAGAGGGAGAGATAGA
GAGAGAAAGAAAAGAGAAGGGAAGGGAAGGGACTTTCTATTTGTATTACA
TTTTAAGTTGCTCTTATATTGCAGGTGGTTG