Gh427, Gh427 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh427
Genbank IDDQ908366
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908366
Source Typegenomic
Repeat MotifTCT(8)
Primer 1Gh427_F: CCTATTGGGTTTCCATAAGAGCAC
Primer 2Gh427_R: GTTGGATGTTTGCGGTAGGATTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908366
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:12514569..12514666 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:12034950..12035047 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold3326.1supercontigscaffold3326.1:44458..44555 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1233_A05supercontigscaffold1233_A05:47414..47511 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:12201174..12201271 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:11817473..11817570 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:12237666..12237763 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:12440897..12440994 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:9552173..9552270 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12729supercontigscaffold12729:202943..203040 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:11618236..11618333 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:12187735..12187832 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017640.1chromosomeCM017640.1:12308292..12308389 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:11917551..11917648 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:12473729..12473826 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
E13chromosomeE13:107718603..107718711 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:93074270..93074438 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908366DQ908366Gossypium hirsutumsequence_feature


Sequence
>Gh427 ID=Gh427; Name=Gh427; organism=Gossypium hirsutum; type=genetic_marker; length=99bp
CCTATTGGGTTTCCATAAGAGCACTTTCTCTTCTTCTTTTTCTTCTTCTT
CTTCTCTGTTATTAAGGGTTTTTTTTCAATCCTACCGCAAACATCCAAC