Gh425, Gh425 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh425
Genbank IDDQ908364
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908364
Source Typegenomic
Repeat MotifTCT(14)
Primer 1Gh425_F: GTTTCAATGGCAAAGAATCAGACCC
Primer 2Gh425_R: ACGTTGGATGTCCACAATGGAAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908364
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:24152644..24152831 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:22891831..22892032 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:14475827..14476001 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:32407158..32407367 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:21597460..21597610 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016617.1chromosomeCM016617.1:14556203..14556383 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016626.1chromosomeCM016626.1:147271286..147271507 -Gossypium australe (G2) genome CRI_v1.1n/a
CM016624.1chromosomeCM016624.1:121425534..121425728 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:17418917..17419104 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:22762795..22762982 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:9360163..9360275 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D08chromosomeGhir_D08:23031457..23031648 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:22521892..22522079 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:22267887..22268071 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:93165919..93166099 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D08chromosomeD08:22723849..22724036 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt04chromosomeDt04:9506837..9506949 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8518supercontigscaffold8518:829266..829426 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8260supercontigscaffold8260:127828..127988 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5515supercontigscaffold5515:79521..80088 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5515supercontigscaffold5515:74634..75201 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8518supercontigscaffold8518:827452..827599 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8260supercontigscaffold8260:124947..125164 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21031supercontigscaffold21031:181468..181641 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:10268221..10268368 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D08chromosomeGbar_D08:22800630..22800790 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:8829070..8829182 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:77770406..77770579 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D08chromosomeGbar_D08:22798773..22798965 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:49100175..49100742 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:23044612..23044804 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D02chromosomeD02:50453392..50453959 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:22891971..22892158 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017708.1chromosomeCM017708.1:22994087..22994276 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:23111745..23111932 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:21611084..21611234 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:19858853..19859063 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr04chromosomechr04:41551610..41551782 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr03chromosomeChr03:39467939..39468142 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:7971843..7972494 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:32850811..32851031 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr04chromosomeChr04:7884827..7885023 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeChr01:28864888..28865107 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908364DQ908364Gossypium hirsutumsequence_feature


Sequence
>Gh425 ID=Gh425; Name=Gh425; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
GTTTCAATGGCAAAGAATCAGACCCCGCCAAATTAGGCAAAGAAGATTTT
TTTTTGGTTTTTACAGTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTCTGTTAAGGGGTTTTTTTAGGGGTTTTTTTTCAATTTCTT
CTTAAATTGGGTGGGTTTCCATTGTGGACATCCAACGT