Gh414, Gh414 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh414
Genbank ID	DQ908353
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908353
Source Type	genomic
Repeat Motif	CTT(19)
Primer 1	Gh414_F: TAGATCGAAATAGCTAATCAAGTGCTC
Primer 2	Gh414_R: GTCGTAACTGATGCCTTGAGTCG
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908353

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_1043	supercontig	scaffold_1043:31122..31319 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
At_chr11	chromosome	At_chr11:25968754..25969692 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
scaffold2697_A10	supercontig	scaffold2697_A10:52468..52665 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Scaffold71	supercontig	Scaffold71:3440..3634 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
scaffold1-4_obj	supercontig	scaffold1-4_obj:2665..2862 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A10	chromosome	A10:87308721..87308918 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A10	chromosome	A10:82516601..82516798 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017645.1	chromosome	CM017645.1:91685939..91686157 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
A10	chromosome	A10:90312086..90312283 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr10	chromosome	Chr10:53996540..53996725 -	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr10	chromosome	Chr10:26183288..26183494 -	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908353	DQ908353	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch10_At.10	N/A	77.2	GH414	View

Sequence

>Gh414 ID=Gh414; Name=Gh414; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
TAGATCGAAATAGCTAATCAAGTGCTCTTTTTAATGTTGTATAGCTTTGC
AATTGTTTAGTTTAATATGAAACTGTCTACTATCCAGCAACTTCTTTTTC
TTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTAATTGCTGCCTTTCGACTCAAGGCATCAGTTACGAC

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Gh414, Gh414 (genetic_marker) Gossypium hirsutum