Gh409, Gh409 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh409
Genbank IDDQ908348
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908348
Source Typegenomic
Repeat MotifAG(16)
Primer 1Gh409_F: AGAAGGTAAAAGATGTGAAAACAGAGG
Primer 2Gh409_R: CAGTGCAAGCAACGTGACTTAACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908348
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:20917326..20917435 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:18870360..18870485 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:32428147..32428256 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:18668577..18668678 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:32840255..32840362 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:19149094..19149203 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:19705656..19705763 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:20049177..20049260 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:88083060..88083155 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:88946177..88946262 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:19400358..19400467 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:19728314..19728423 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:19137895..19138004 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:77344770..77344865 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:77341770..77341865 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11963supercontigscaffold11963:104931..105050 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold659supercontigscaffold659:385366..385447 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6485supercontigscaffold6485:88079..88164 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1128supercontigscaffold1128:159620..159715 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1128supercontigscaffold1128:156620..156715 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:19056073..19056190 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:19365059..19365140 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:84199197..84199282 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:82401378..82401473 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:18992705..18992816 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:19212984..19213115 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:19779958..19780075 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:19038341..19038454 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:20183635..20183739 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:32138405..32138514 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:19159765..19159878 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:16496634..16496729 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:12539139..12539246 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:18903837..18903952 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F04chromosomeF04:25764706..25764811 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeGh409:1..852 .
Chr12:18365965..18366815 +		n/a
Chr7chromosomeGh409:1..852 .
Chr7:18379789..18380639 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908348DQ908348Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A95.5Gh409View
Sequence
>Gh409 ID=Gh409; Name=Gh409; organism=Gossypium hirsutum; type=genetic_marker; length=110bp
AGAAGGTAAAAGATGTGAAAACAGAGGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGGGGCAGAGACAGATGCTTATTAGTGATGGTTAAGTCACGTT
GCTTGCACTG