Gh393, Gh393 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh393
Genbank IDDQ908332
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908332
Source Typegenomic
Repeat MotifCA(9)
Primer 1Gh393_F: CGGCAATAGTTCAGATGGTGAGG
Primer 2Gh393_R: GGATACCCACTTATCCAAGAATGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908332
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:2095564..2095713 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:1938066..1938218 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:48212460..48212609 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:1890880..1891022 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:2564972..2565110 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1471.1supercontigscaffold1471.1:186996..187145 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:1958468..1958617 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:2053264..2053413 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:2149127..2149276 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:1935715..1935864 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:1935686..1935835 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9935supercontigscaffold9935:211701..211853 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:1911682..1911834 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:1971416..1971568 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:2049984..2050134 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:2094716..2094859 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:2074040..2074191 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:2380452..2380601 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:48643203..48643353 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr12chromosomechr12:2012891..2013028 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:1559247..1559485 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:2051188..2051338 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12_3469427chromosomeChr12_3469427:2926..3074 +Gossypium gossypioides (D6) genome ISU_v1n/a
E04chromosomeE04:3094692..3094833 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:1942553..1942690 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:2072936..2073074 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr12chromosomeGh393:1..485 .
Chr12:2031650..2032136 +		n/a
Chr12chromosomeGh393:1..485 .
Chr12:23244679..23245165 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908332DQ908332Gossypium hirsutumsequence_feature


Sequence
>Gh393 ID=Gh393; Name=Gh393; organism=Gossypium hirsutum; type=genetic_marker; length=148bp
CGGCAATAGTTCAGATGGTGAGGGGTTTGAAAAAGGTAAAAAAAACACAC
ACACACACACACAGTATCGATTCAATTTCCGAAGATCGTTGATCTAGCAA
GGTGATAAGATGGATAAAATGAAAGCATTCTTGGATAAGTGGGTATCC