Gh384, Gh384 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh384
Genbank IDDQ908323
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908323
Source Typegenomic
Repeat MotifAG(7)
Primer 1Gh384_F: CCGCGAGAATATCAAACTCGAACAC
Primer 2Gh384_R: CTGGTCCCCTTTTAATCTCTGCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908323
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:63851223..63851306 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:60930477..60930560 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:87033555..87033638 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:87176825..87176908 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:57033248..57033331 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:66067522..66067605 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:63685191..63685274 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:64226357..64226440 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:62532108..62532191 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4256supercontigscaffold4256:79873..79956 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:60748660..60748743 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:61293925..61294008 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:63913226..63913309 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:66968416..66968499 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:61488779..61488862 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:65801074..65801157 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:36527111..36527194 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:35919710..35919793 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908323DQ908323Gossypium hirsutumsequence_feature


Sequence
>Gh384 ID=Gh384; Name=Gh384; organism=Gossypium hirsutum; type=genetic_marker; length=84bp
CCGCGAGAATATCAAACTCGAACACAAAAATTGAAAAGAGATAGAGAGAG
AGAGAGGTTTCGGCAGAGATTAAAAGGGGACCAG