Gh341, Gh341 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh341
Genbank IDDQ908280
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908280
Source Typegenomic
Repeat MotifAGA(9)
Primer 1Gh341_F: CTGATACAGTAGGAAACTCAATAGAG
Primer 2Gh341_R: CATCTTCTATCCGTAATTGTGTTTGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908280
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:2048497..2048674 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:1729257..1729413 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:2254847..2255027 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:2124973..2125174 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold336.1supercontigscaffold336.1:780082..780259 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:1958219..1958396 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:1966696..1966852 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:2004364..2004541 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:1893384..1893561 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:2010583..2010760 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:1860629..1860788 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:2029880..2030057 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:1839715..1839871 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold26079supercontigscaffold26079:247900..248056 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10262supercontigscaffold10262:96307..96487 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold1745supercontigScaffold1745:21320..21500 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D07chromosomeGbar_D07:1886629..1886785 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:2115574..2115754 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:1861990..1862146 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:2042537..2042717 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:1909785..1909995 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:1941758..1941917 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:2017801..2017993 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:1894709..1894865 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:2136738..2136915 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:2036176..2036353 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:2045421..2045595 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:2100773..2100974 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:2272387..2272549 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:1790658..1790844 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:1906741..1906898 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:1868578..1868734 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:1412232..1412388 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:1412626..1412781 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:1625543..1625705 +Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:1876333..1876492 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:2135411..2135579 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908280DQ908280Gossypium hirsutumsequence_feature


Sequence
>Gh341 ID=Gh341; Name=Gh341; organism=Gossypium hirsutum; type=genetic_marker; length=178bp
CTGATACAGTAGGAAACTCAATAGAGCATAATATAGAGCATAATCCGAAA
TTAGAACTTCTTTAACTCTCACAACGTTAAATAGAAGAAGAAGAAGAAGA
AGAAGAAGAAATACTAAAATGAAAACAGATTAAAAACAAAGAAAGCATAA
TTCCAAACACAATTACGGATAGAAGATG