Gh338, Gh338 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh338
Genbank IDDQ908277
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908277
Source Typegenomic
Repeat MotifCA(16)
Primer 1Gh338_F: ACCGAAACAGTCCCATAAACTTGC
Primer 2Gh338_R: CGGTTATAAGTGACATTTAATAGGTGTAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908277
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:43397429..43397594 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:14427257..14427411 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:43760333..43760499 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:14286401..14286542 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_02chromosomeD10_02:42168606..42168744 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:19813447..19813612 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:14299022..14299176 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:37394185..37394368 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:13145110..13145264 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:39986208..39986345 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:43324955..43325120 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:15420415..15420567 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:44783491..44783656 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:14724884..14725038 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:44180850..44181013 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:15240939..15241093 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:43461057..43461218 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:14518282..14518434 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:40076072..40076543 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:13828746..13828898 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7261supercontigscaffold7261:53195..53347 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4852supercontigscaffold4852:164360..164497 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4852supercontigscaffold4852:163249..163386 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18923supercontigscaffold18923:156048..156519 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:38970376..38970513 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:42181340..42181502 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:14258241..14258393 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:44647516..44647682 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:14208002..14208159 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:43139200..43139396 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:14716068..14716247 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:47221662..47221832 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:15021019..15021158 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:44684109..44684269 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:14468905..14469054 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:45421327..45421492 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:15555152..15555306 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:14473868..14474015 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:41123626..41123769 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:43088063..43088214 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F02chromosomeF02:63308145..63308301 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908277DQ908277Gossypium hirsutumsequence_feature


Sequence
>Gh338 ID=Gh338; Name=Gh338; organism=Gossypium hirsutum; type=genetic_marker; length=153bp
ACCGAAACAGTCCCATAAACTTGCTTTAATACAATACCTAAATAAACATA
CAAAATGGGCAAATTCATAAATTTGAACACCAAACACACACACACACACA
CACACACACACACACATATATATGTTACACCTATTAAATGTCACTTATAA
CCG