Gh326, Gh326 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh326
Genbank IDDQ908265
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908265
Source Typegenomic
Repeat MotifAG(11)
Primer 1Gh326_F: CGAGAGCTATCAATACCCAAACTC
Primer 2Gh326_R: GCTTAAACATATGGATGTTCTAACCTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908265
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:26703723..26703833 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:25449830..25449936 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:56459707..56459859 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:21081334..21081442 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
tig00002439_CRI-A2_v1.0.a1chromosometig00002439_CRI-A2_v1.0.a1:14088..14229 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:22607798..22607927 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:93697198..93697328 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:49381997..49382141 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:5072809..5072919 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:24542333..24542443 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3609_A13supercontigscaffold3609_A13:22439..22583 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:26790984..26791096 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:55651842..55651966 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:26336654..26336764 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:58146281..58146425 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:26794664..26794774 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:56361169..56361311 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:25015733..25015843 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:54966949..54967073 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9701supercontigscaffold9701:44322..44482 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3575supercontigscaffold3575:76697..76803 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:25431213..25431319 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:57144848..57144998 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:25199745..25199851 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:60353060..60353210 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:25439413..25439517 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:27279319..27279425 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:61413513..61413637 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:26010700..26010806 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:58853077..58853227 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:27071123..27071233 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:58187644..58187786 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:63932216..63932358 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:20626045..20626153 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:59819144..59819256 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:22245739..22245845 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:42340257..42340379 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:37134049..37134286 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:23138040..23138148 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:39278251..39278436 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:30686374..30686494 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:37966035..37966141 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:45818837..45818945 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:47773671..47773826 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908265DQ908265Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch13_At.13N/A40.1Gh326View
2CCRI-36 x G2005, RIL (2016)AD_ch13_At.13N/A86.84Gh326View
Sequence
>Gh326 ID=Gh326; Name=Gh326; organism=Gossypium hirsutum; type=genetic_marker; length=111bp
CGAGAGCTATCAATACCCAAACTCAAAGGGGAAAAGAGAGAGAGAGAGAG
AGAGAGGAAAGGAATGAATATCTTATACGCATCCCAGGTTAGAACATCCA
TATGTTTAAGC