Gh321, Gh321 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh321
Genbank IDDQ908260
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908260
Source Typegenomic
Repeat MotifCTCTTT(4)
Primer 1Gh321_F: GATTTAACATTGGTTCTTCCTCCAC
Primer 2Gh321_R: CAACTAGTATTGTATCCACTTGACG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908260
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:31531505..31531623 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:29301660..29301784 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:35054810..35054976 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:43774784..43774902 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:31137279..31137397 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:30098175..30098293 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:30600057..30600175 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:30558835..30558953 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:30309851..30309969 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt02chromosomeDt02:30412736..30412860 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8898supercontigscaffold8898:133688..133812 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:29606627..29606751 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:29803532..29803656 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:30254840..30254958 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:31522201..31522313 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:29489983..29490107 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:30996843..30996961 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:29287578..29287709 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:21470981..21471169 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908260DQ908260Gossypium hirsutumsequence_feature


Sequence
>Gh321 ID=Gh321; Name=Gh321; organism=Gossypium hirsutum; type=genetic_marker; length=119bp
GATTTAACATTGGTTCTTCCTCCACTCTTTTATTTTCTTTTTCCTCTCTT
TCTCTTTCTCTTTCTCTTTCTCTTTTGTTCTTTTTTATTACTTTCGTCAA
GTGGATACAATACTAGTTG