Gh299, Gh299 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh299
Genbank IDDQ908239
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908239
Source Typegenomic
Repeat MotifCTT(10)
Primer 1Gh299_F: AACAGAATAAGATGGTGACATATGGC
Primer 2Gh299_R: GAGGAGGGATTTGAAGGGTTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908239
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:28248253..28248524 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:24385253..24385531 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:52007012..52007283 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:68076411..68076682 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:26061618..26061889 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:25900530..25900801 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:24694425..24694696 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:25479190..25479461 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:24494767..24495038 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:27830290..27830565 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2783supercontigscaffold2783:208164..208439 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:24408423..24408698 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:24311362..24311634 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:24710401..24710678 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:25315413..25315687 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:24490615..24490890 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:25937301..25937572 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908239DQ908239Gossypium hirsutumsequence_feature


Sequence
>Gh299 ID=Gh299; Name=Gh299; organism=Gossypium hirsutum; type=genetic_marker; length=272bp
AACAGAATAAGATGGTGACATATGGCATAAATGATGTCACAGTGATGTCA
TAATCTAAAAAAATTATAAAAAAAAACTTTTTTTTTCTTTTGCCTTTTCT
CCCACCAGTTTTTATGTCGCTCCTTTTTTTTCCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTGTAGAGATTTTTTCTTGGATTTTTTTCTTTTCCTTTCC
CTTTCAATCTCTTCTATTGTCCTCTCCCTTTCCCTCTTCTCCATTGAATC
GGAACCCTTCAAATCCCTCCTC