Gh296, Gh296 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh296
Genbank IDDQ908236
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908236
Source Typegenomic
Repeat MotifT(16)
Primer 1Gh296_F: ACTAACCTGCACACTATCGATCTG
Primer 2Gh296_R: CTTGAAAAGGACCCAAATATGTCACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908236
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:102820783..102820863 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:7202518..7202598 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:102622000..102622080 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:14303030..14303115 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A11chromosomeA11:82577512..82577593 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:111668935..111669016 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:107733045..107733126 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:104552085..104552166 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:87036056..87036136 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4420supercontigscaffold4420:403245..403325 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:101043056..101043136 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017620.1chromosomeCM017620.1:108080376..108080454 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:114624473..114624551 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:103149448..103149527 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:112462262..112462343 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:116341711..116341792 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:114766166..114766251 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:88227680..88227764 -Gossypium anomalum (B1) genome NSF_v1n/a
F11chromosomeF11:87376505..87376586 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908236DQ908236Gossypium hirsutumsequence_feature


Sequence
>Gh296 ID=Gh296; Name=Gh296; organism=Gossypium hirsutum; type=genetic_marker; length=82bp
ACTAACCTGCACACTATCGATCTGGATCCTCTTTTTTCCTTTTTTTTTTT
TTTTTTGGTGACATATTTGGGTCCTTTTCAAG