Gh291, Gh291 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh291
Genbank IDDQ908231
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908231
Source Typegenomic
Repeat MotifTC(9)
Primer 1Gh291_F: AGTTGAGATTTGATCTTGAAGAGCG
Primer 2Gh291_R: ACCTCTTCTCGATTTGGTTGCATC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908231
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:7014231..7014322 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:6564828..6564917 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:7287765..7287852 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr6chromosomeDt_chr6:43489666..43489757 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:6649744..6649835 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:6887663..6887754 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:6654818..6654909 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:6923801..6923892 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
scaffold9598supercontigscaffold9598:379672..379761 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:6669691..6669780 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:6712401..6712490 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:6736795..6736886 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:6777815..6777907 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:6867489..6867579 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:7066371..7066462 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:6623073..6623158 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:7696137..7696224 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908231DQ908231Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch09_At.09N/A32Gh291View
Sequence
>Gh291 ID=Gh291; Name=Gh291; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
AGTTGAGATTTGATCTTGAAGAGCGAATTTTATCTCTCTCCCTCTCTCTC
TCTCTCTCTCTTTTTGTTGATGCAACCAAATCGAGAAGAGGT