Gh289, Gh289 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh289
Genbank IDDQ908229
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908229
Source Typegenomic
Repeat MotifTCT(8)
Primer 1Gh289_F: GGCATATGGAAGAAAAATGAGTCGG
Primer 2Gh289_R: CCTTGTTAGGGGCTTTGAATTGCG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908229
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_81supercontigscaffold_81:84489..84670 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:35491251..35491429 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:39629341..39629519 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:4940742..4940923 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1353_A06supercontigscaffold1353_A06:59522..59703 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:37457091..37457272 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:36487378..36487559 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:36749653..36749834 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:36607719..36607900 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6104supercontigscaffold6104:29467..29645 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6104supercontigscaffold6104:28108..28286 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:35249337..35249515 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:35467192..35467370 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:36590721..36590899 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:37730843..37731024 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:36004006..36004184 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:37621489..37621670 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:38828871..38829044 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:40242831..40243009 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_06chromosomeB_06:63888182..63888374 -Gossypium anomalum (B1) genome NSF_v1n/a
E06chromosomeE06:79651159..79651335 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:35896566..35896758 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:128124199..128124375 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908229DQ908229Gossypium hirsutumsequence_feature


Sequence
>Gh289 ID=Gh289; Name=Gh289; organism=Gossypium hirsutum; type=genetic_marker; length=182bp
GGCATATGGAAGAAAAATGAGTCGGGAAGAAGATATACCAAAATTTCCAA
TTTTTTTCCCTTTTAGAATCATTAATGATTGAATGTGTTTTTCTTCTTCT
TCTTCTTCTTCTTCTTTTTTGGTGATAAATAAGAAAGTAAAGAAACAAAA
CTACATAACGCAATTCAAAGCCCCTAACAAGG