Gh285, Gh285 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh285
Genbank ID	DQ908225
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908225
Source Type	genomic
Repeat Motif	TC(7)
Primer 1	Gh285_F: GTAGATATTGGGACATCTTGTAGCC
Primer 2	Gh285_R: GAACTAAACTTAAAGAGTTGTTATCCAC
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908225

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A04	chromosome	A04:69222523..69222619 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
Chr04_CRI-A2_v1.0.a1	chromosome	Chr04_CRI-A2_v1.0.a1:14012059..14012153 +	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
A04	chromosome	A04:50766019..50766115 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A04	chromosome	Ghir_A04:71550950..71551044 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A04	chromosome	A04:74612452..74612548 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A04	chromosome	A04:71678021..71678117 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A04	chromosome	A04:67294666..67294762 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017613.1	chromosome	CM017613.1:70282336..70282432 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017639.1	chromosome	CM017639.1:78299337..78299433 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017691.1	chromosome	CM017691.1:68574448..68574544 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A04	chromosome	A04:75279645..75279741 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908225	DQ908225	Gossypium hirsutum	sequence_feature

Sequence

>Gh285 ID=Gh285; Name=Gh285; organism=Gossypium hirsutum; type=genetic_marker; length=97bp
GTAGATATTGGGACATCTTGTAGCCTTAAACTTCTCTCTCTCTCTCGGTC
TCTCTCTCTCTCTTTTTATGTGGATAACAACTCTTTAAGTTTAGTTC

Search form

Gh285, Gh285 (genetic_marker) Gossypium hirsutum