Gh282, Gh282 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh282
Genbank IDDQ908222
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908222
Source Typegenomic
Repeat MotifGT(10)
Primer 1Gh282_F: CTGTAAAACCTAGAAACCGAATGCG
Primer 2Gh282_R: CCAAAGATCAGACCTAGAAGTGCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908222
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:60782014..60782250 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:114486885..114487125 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:57222745..57222984 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:53548550..53548782 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:119440557..119440798 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:7616455..7616699 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold347.1supercontigscaffold347.1:702972..703208 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold149.1supercontigscaffold149.1:1371266..1371506 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:57402509..57402745 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:95262532..95262772 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:59996830..59997066 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:113099295..113099534 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:60649880..60650116 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:115994805..115995045 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:59857560..59857797 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:115915400..115915640 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:57135958..57136194 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:111823276..111823516 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7966supercontigscaffold7966:58736..58975 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:57259105..57259344 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:59173587..59173826 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:58760388..58760623 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:110036410..110036649 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:60948856..60949110 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:119455395..119455642 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:57632491..57632729 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:60547309..60547545 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:117809553..117809793 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:122063259..122063499 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:123089586..123089828 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:54434686..54434918 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr04chromosomechr04:41959836..41960075 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:38501968..38502366 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:58154227..58154464 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:36744631..36744959 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:30946984..30947214 -Gossypium gossypioides (D6) genome ISU_v1n/a
F08chromosomeF08:96217495..96217735 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908222DQ908222Gossypium hirsutumsequence_feature


Sequence
>Gh282 ID=Gh282; Name=Gh282; organism=Gossypium hirsutum; type=genetic_marker; length=237bp
CTGTAAAACCTAGAAACCGAATGCGTTAATGGTATTGAAAATCTCAAATT
TGTCTCTGAATATTTGCTTTTGTGTGTGTGTGTGTGTGTGTTAGCATACA
AGTTTGTGTTTTATGTTAAAATTTCGATTTTTGTTGAAGTAGTTTTTTTT
TATAATGGAATTTCATTTTTCCCTTGTTAAAAGATTTCAATTTTTAGGAA
TATTTGTTATTGAGGCACTTCTAGGTCTGATCTTTGG