Gh281, Gh281 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh281
Genbank IDDQ908221
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908221
Source Typegenomic
Repeat MotifTCT(7)
Primer 1Gh281_F: CGAGGAGCAGCAGCGGTTCCT
Primer 2Gh281_R: ACATCAAACAATCAATCAACCAGTGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908221
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:5484615..5484700 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:5542395..5542480 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:5175295..5175380 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:5816775..5816860 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:5115765..5115856 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:5831669..5831763 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:48714600..48714681 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:108581395..108581480 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2005.1supercontigscaffold2005.1:149769..149854 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:40751676..40751761 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:4953570..4953655 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:5044037..5044122 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:5419848..5419933 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:5899542..5899627 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:5218777..5218862 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:5532538..5532623 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:5373587..5373672 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:5858339..5858424 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:5206626..5206711 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:5912231..5912316 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:5652488..5652573 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4016supercontigscaffold4016:24294..24379 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23728supercontigscaffold23728:5563..5648 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:5432668..5432753 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:5781604..5781689 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:5344021..5344106 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:5650335..5650420 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:5644652..5644737 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:5574865..5574950 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:5534815..5534909 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:5817085..5817167 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:5417560..5417645 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:5483520..5483605 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:5909897..5909982 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:5865334..5865419 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:5834911..5835005 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:48420487..48420578 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:6186878..6186963 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:5250147..5250235 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:4957482..4957570 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:5322939..5323024 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:5328565..5328650 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:4137594..4137682 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:3815069..3815163 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:4625916..4626004 +Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:5296272..5296354 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:8369159..8369244 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeGh281:1..609 .
Chr01:5083325..5083940 +		n/a
scaffold141supercontigGh281:1..609 .
scaffold141:56367..56982 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908221DQ908221Gossypium hirsutumsequence_feature


Sequence
>Gh281 ID=Gh281; Name=Gh281; organism=Gossypium hirsutum; type=genetic_marker; length=86bp
CGAGGAGCAGCAGCGGTTCCTTCTTTCTCTTCTTCTTCTTCTTCTTCTTC
AGCCTTTTCTCCACTGGTTGATTGATTGTTTGATGT