Gh280, Gh280 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh280
Genbank IDDQ908220
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908220
Source Typegenomic
Repeat MotifCA(10)
Primer 1Gh280_F: CAGGGCTTAATAGTCGTCGAACG
Primer 2Gh280_R: TAGATTAAATGTTTAATGTGTTGTTCTACTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908220
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:91868672..91868810 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:26527316..26527454 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr3chromosomeDt_chr3:37199205..37199447 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:12680344..12680482 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3920_D03supercontigscaffold3920_D03:3711968..3712210 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:81653417..81653555 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:95373547..95373685 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:96588414..96588552 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:20705933..20706175 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:95514128..95514266 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:90608796..90608934 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:42225428..42225563 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6463supercontigscaffold6463:119906..120044 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5175supercontigscaffold5175:377282..377417 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:42280472..42280607 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:89908173..89908311 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:91708584..91708722 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:91282832..91282962 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:98776148..98776282 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:93034110..93034246 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:98501372..98501510 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:104807601..104807735 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:98285822..98285960 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:26825264..26825410 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908220DQ908220Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A86.4Gh280View
Sequence
>Gh280 ID=Gh280; Name=Gh280; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
CAGGGCTTAATAGTCGTCGAACGTCGTTGGATTTTCATTGTTTCTTTACA
TGATAAATTTCATAATAACACACACACACACACACACATATATATATTGA
TTCATTTACAGTAGAACAACACATTAAACATTTAATCTA