Gh278, Gh278 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh278
Genbank IDDQ908218
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908218
Source Typegenomic
Repeat MotifGT(8)
Primer 1Gh278_F: CATTTGAATGGCTTGTGTTGGACAT
Primer 2Gh278_R: AATGTTATCCATCCTTCAAACACACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908218
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:45497146..45497258 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:49302693..49302805 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:59688021..59688131 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:44252063..44252175 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:42528936..42529048 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:40152964..40153076 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:50978054..50978166 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:52778395..52778507 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:51281644..51281755 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:47962603..47962715 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold185supercontigscaffold185:322605..322717 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13354supercontigscaffold13354:32087..32184 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:50123707..50123819 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:51140786..51140898 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:49425917..49426031 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:53143452..53143568 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A10chromosomeA10:53458703..53458815 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:66428599..66428711 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:64810090..64810200 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908218DQ908218Gossypium hirsutumsequence_feature


Sequence
>Gh278 ID=Gh278; Name=Gh278; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
CATTTGAATGGCTTGTGTTGGACATATTTTGATGTATATATATATGTGTG
TGTGTGTGTGTGGTCTTATCATGCTTGATATATTTTTGGTGTGTTTGAAG
GATGGATAACATT