Gh276, Gh276 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh276
Genbank IDDQ908216
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908216
Source Typegenomic
Repeat MotifCT(16)
Primer 1Gh276_F: CCATTGGCTGAGCCTACAAAGC
Primer 2Gh276_R: GTGGTGGTGTTGATTGCAAGTGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908216
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:5874533..5874641 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:6365100..6365217 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:5367580..5367688 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:6273901..6274017 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:5128076..5128184 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:19686143..19686254 +Gossypioides kirkii genome ISU_v3n/a
KI_08chromosomeKI_08:14911276..14911398 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:6309875..6310000 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:55343820..55343932 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:9127851..9127961 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:55141478..55141595 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:63573642..63573750 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:5575033..5575141 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:5982010..5982127 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:5706920..5707028 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:6401344..6401461 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:5512575..5512683 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:6214201..6214318 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:5640960..5641068 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:6384109..6384224 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:5516062..5516170 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:6777359..6777476 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold30354supercontigscaffold30354:81244..81360 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11882supercontigscaffold11882:13574..13682 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:5585351..5585459 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:5960323..5960439 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:5677153..5677261 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:6535501..6535617 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:5521069..5521177 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:6381116..6381259 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:5838425..5838533 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:6403273..6403403 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:5573513..5573621 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:6289013..6289129 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:5659950..5660058 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:6546652..6546769 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:6744325..6744443 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:6188050..6188175 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:5159559..5159667 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:79903842..79903954 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:5309193..5309303 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:4978047..4978157 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:5316841..5316953 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:5473602..5473716 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:5018475..5018585 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:4182945..4183055 -Gossypium gossypioides (D6) genome ISU_v1n/a
F05chromosomeF05:5365287..5365399 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:191683668..191683776 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908216DQ908216Gossypium hirsutumsequence_feature


Sequence
>Gh276 ID=Gh276; Name=Gh276; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
CCATTGGCTGAGCCTACAAAGCCTTTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTCTTTCTATTTTAATCTTTTTCTCTTACCCTTTATTCACTTG
CAATCAACACCACCAC