Gh269, Gh269 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh269
Genbank IDDQ908209
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908209
Source Typegenomic
Repeat MotifTC(9)
Primer 1Gh269_F: GTTTTCTTTTAAGCACAGGGTGTATGG
Primer 2Gh269_R: GTTTCCCTAATGTTGCATCGCTGT
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908209
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:60448087..60448262 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:65607412..65607585 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:74715283..74715454 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:56442052..56442227 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:38286373..38286548 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:64261176..64261351 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:67434773..67434948 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:65312937..65313112 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:64018451..64018626 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold10299supercontigscaffold10299:248567..248740 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:66613886..66614059 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:69822100..69822273 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:66915963..66916136 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:69287805..69287978 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:68196384..68196555 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:67484014..67484189 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:48067398..48067569 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:73771004..73771175 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908209DQ908209Gossypium hirsutumsequence_feature


Sequence
>Gh269 ID=Gh269; Name=Gh269; organism=Gossypium hirsutum; type=genetic_marker; length=176bp
GTTTTCTTTTAAGCACAGGGTGTATGGGGAAAAATAGTTATGGAAATATT
GAAGTAAAATTTTCCAGAATTTTTTCTCTTTAAATTCTTCTCTTCTCTCT
CTCTCTCTCTCGTAATTCTTCCCTTTTCTATTTCAATTTCTAAGATCATA
TCACAGCGATGCAACATTAGGGAAAC