Gh267, Gh267 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh267
Genbank IDDQ908207
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908207
Source Typegenomic
Repeat MotifCA(16)
Primer 1Gh267_F: CAAAAAATGACACTGTCTCCGTTAAATG
Primer 2Gh267_R: GTTGTTCTAGCTGTTGAATGGTGATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908207
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:41256238..41256397 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:38330251..38330406 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:21254056..21254203 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:33244447..33244614 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:101498296..101498446 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4359.1supercontigscaffold4359.1:35342..35501 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:37532900..37533059 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:40678768..40678927 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:39933505..39933664 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:40603233..40603392 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:38410519..38410678 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1738supercontigscaffold1738:217497..217652 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:37574072..37574227 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:38922628..38922783 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:38694287..38694446 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:41057785..41057934 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:39422255..39422402 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:40565765..40565924 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:36516519..36516667 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:36824206..36824353 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:37808725..37808870 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:25583855..25584102 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08_1373958chromosomeChr08_1373958:409..565 +Gossypium gossypioides (D6) genome ISU_v1n/a
E12chromosomeE12:82830381..82830534 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeGh267:1..587 .
Chr08:36080906..36081479 +		n/a
Chr8chromosomeGh267:1..587 .
Chr8:36392425..36392998 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908207DQ908207Gossypium hirsutumsequence_feature


Sequence
>Gh267 ID=Gh267; Name=Gh267; organism=Gossypium hirsutum; type=genetic_marker; length=162bp
CAAAAAATGACACTGTCTCCGTTAAATGTATAAATATTAAACAACCTTCA
AAAAAATCTCCACACACACACACACACACACACACACACACAAAAAGCTC
TGTTTTTTTTTCATTAATGGAGTGTGACAAAAAATACATCACCATTCAAC
AGCTAGAACAAC