Gh265, Gh265 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh265
Genbank IDDQ908205
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908205
Source Typegenomic
Repeat MotifCA(9)
Primer 1Gh265_F: CAATCAATTCAGTGAGGAACTTCAC
Primer 2Gh265_R: AACTTTCCATATGCATGCTTGGAAGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908205
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:2318861..2319028 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:2319790..2319967 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:2314052..2314227 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:1980463..1980628 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:2223846..2224023 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:58481777..58481940 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:3420458..3420617 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:67240248..67240415 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:49982428..49982607 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:2158415..2158582 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:1820554..1820733 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:2293776..2293943 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:2380164..2380343 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:2132894..2133061 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:2284142..2284321 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:2203109..2203276 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:2355311..2355489 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:2207468..2207635 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:2513579..2513758 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold42938supercontigscaffold42938:25992..26159 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold42938supercontigscaffold42938:24468..24643 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19575supercontigscaffold19575:61565..61732 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19575supercontigscaffold19575:56129..56296 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:2147186..2147353 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:2328493..2328660 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:2356998..2357173 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:2175356..2175521 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:2316547..2316722 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:2154364..2154539 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:2381900..2382079 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:2148210..2148377 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:2228516..2228683 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:2212358..2212525 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:2442610..2442789 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:2433869..2434039 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:2495144..2495323 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:2099011..2099190 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:1986725..1986890 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:83705498..83705659 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:2094956..2095121 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:1935231..1935400 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:2245699..2245862 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:2156502..2156664 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:1942866..1943029 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:1536957..1537118 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:1956699..1956864 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:2618631..2618792 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:2076836..2076997 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:196587198..196587358 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908205DQ908205Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A17.6GH265View
Sequence
>Gh265 ID=Gh265; Name=Gh265; organism=Gossypium hirsutum; type=genetic_marker; length=168bp
CAATCAATTCAGTGAGGAACTTCACAAAAAATAGTTAATTGATTCTTATA
AGTAAATAAACTGAATATGCAGCTTTTATACTTTAATAAACACACACACA
CACACACATATATATATCTAAGGCTTAATACTAGTTTTTGTATCTTCCAA
GCATGCATATGGAAAGTT