Gh257, Gh257 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh257
Genbank IDDQ908197
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908197
Source Typegenomic
Repeat MotifTC(10)
Primer 1Gh257_F: GATCAAACAGTAGAAAATGAGAGCTC
Primer 2Gh257_R: TTCTGAAAGTTCTCTTTGGGGTATC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908197
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:63936186..63936341 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:100174458..100174617 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:60286678..60286833 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:98236158..98236329 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:127582913..127583086 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:6478280..6478447 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:14722943..14723098 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:48886495..48886656 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:61115852..61116007 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:92916436..92916597 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:62883848..62884003 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:104854931..104855088 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:63166255..63166410 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:103817781..103817942 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:64290004..64290159 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:101932132..101932293 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:61335748..61335903 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:97180629..97180790 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17851supercontigscaffold17851:49696..49865 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10500supercontigscaffold10500:95449..95604 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10500supercontigscaffold10500:89529..89684 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:60858741..60858896 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:97404949..97405116 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:62146458..62146613 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:99828357..99828526 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:63179532..63179685 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:99014100..99014273 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:64798818..64798977 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:106189221..106189396 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:61756713..61756868 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:100138122..100138307 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:65266823..65266978 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:105505272..105505431 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:8165251..8165416 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:8111770..8111943 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:56444713..56444872 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:59346154..59346335 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:38663137..38663304 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:61109519..61109700 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:33138576..33138752 +Gossypium gossypioides (D6) genome ISU_v1n/a
E03chromosomeE03:116869126..116869280 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:104868445..104868600 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908197DQ908197Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A105.8GH257View
Sequence
>Gh257 ID=Gh257; Name=Gh257; organism=Gossypium hirsutum; type=genetic_marker; length=162bp
GATCAAACAGTAGAAAATGAGAGCTCAACAAACTAATTCTCTCTCTCTCT
CTCTCTCCCTCTCTCTCTCTCCCCTCCTTCCCTTGTGTTGTATATATAAT
TCTTATATTGGTTTTAATATAAACAAACAACAAAAAAGATACCCCAAAGA
GAACTTTCAGAA