Gh253, Gh253 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh253
Genbank IDDQ908194
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908194
Source Typegenomic
Repeat MotifGT(9)
Primer 1Gh253_F: CCCAGCCATTACATGTCAGTTCG
Primer 2Gh253_R: GATATTGCCTCACACCCACCAAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908194
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:55043986..55044088 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:53032087..53032187 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:48517424..48517528 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:3090129..3090243 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:4991890..4991992 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:48581135..48581237 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:52190219..52190321 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:56264561..56264663 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:94741855..94741943 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:94756352..94756440 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:55452222..55452324 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:55802300..55802402 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:52140108..52140210 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:83701720..83701808 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At07chromosomeAt07:83714035..83714123 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold29611supercontigscaffold29611:47789..47889 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold29611supercontigscaffold29611:38303..38403 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21040supercontigscaffold21040:101813..101901 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21040supercontigscaffold21040:114128..114216 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:53403242..53403342 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:89965124..89965212 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:89976420..89976508 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:54075990..54076090 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:53964230..53964330 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:54960948..54961048 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:54087602..54087702 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:56394963..56395065 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:2955529..2955633 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:52858606..52858706 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:42951340..42951444 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr01chromosomechr01:42952935..42953036 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:52657005..52657107 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:39961719..39961819 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:38586872..38586972 -Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:79651018..79651114 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeGh253:1..616 .
Chr01:52601058..52601675 -		n/a
Chr2chromosomeGh253:1..616 .
Chr2:3136092..3136709 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908194DQ908194Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A146.6Gh253View
2Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A27Gh253View
Sequence
>Gh253 ID=Gh253; Name=Gh253; organism=Gossypium hirsutum; type=genetic_marker; length=103bp
CCCAGCCATTACATGTCAGTTCGGTTTTTAGTTTGCATATTCAGCATTTA
TTCCTTCCCTCTGTGTGTGTGTGTGTGTGTCTTGGTGGGTGTGAGGCAAT
ATC