Gh251, Gh251 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh251
Genbank IDDQ908192
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908192
Source Typegenomic
Repeat MotifTCT(9)
Primer 1Gh251_F: CCTCTATTATTGTTGTTGCCTACAC
Primer 2Gh251_R: GCAATATAGTAAAAGAGATGGTGCAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908192
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_4279supercontigscaffold_4279:13098..13205 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:37339456..37339565 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:34968385..34968494 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00014220_CRI-A2_v1.0.a1chromosometig00014220_CRI-A2_v1.0.a1:149636..149766 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:28693139..28693239 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:99528978..99529082 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold7092.1supercontigscaffold7092.1:2684..2793 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:35818017..35818126 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold860supercontigScaffold860:26189..26283 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:35415803..35415912 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:25628184..25628278 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:67905763..67905893 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:34777770..34777879 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:35641358..35641467 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Dt10chromosomeDt10:38024193..38024302 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9144supercontigscaffold9144:81253..81362 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4289supercontigscaffold4289:56153..56247 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3838supercontigscaffold3838:264888..265021 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:48915710..48915804 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:34864645..34864754 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:35432665..35432771 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:63790379..63790509 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:34512174..34512283 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:36216799..36216896 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:74709065..74709195 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:35565507..35565619 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:36043017..36043126 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:72333566..72333696 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:73702340..73702470 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:43267604..43267712 -Gossypium anomalum (B1) genome NSF_v1n/a
chr11chromosomechr11:29964267..29964367 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:24368118..24368218 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:35737060..35737166 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:15522275..15522384 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:26251513..26251616 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908192DQ908192Gossypium hirsutumsequence_feature


Sequence
>Gh251 ID=Gh251; Name=Gh251; organism=Gossypium hirsutum; type=genetic_marker; length=109bp
CCTCTATTATTGTTGTTGCCTACACCTCCCTTTTTACCATATTCTTCTTC
TTCTTCTTCTTCTTCTTCTTTTTGATCAAAATTGTGCACCATCTCTTTTA
CTATATTGC