Gh249, Gh249 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh249
Genbank IDDQ908190
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908190
Source Typegenomic
Repeat MotifCT(10)
Primer 1Gh249_F: ATATTGTTAAAATGAGTAATGAGGCAAAGA
Primer 2Gh249_R: GTTGGCATTTAATTAAGGTATTATGCCGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908190
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:6230342..6230458 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:7058280..7058396 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:5829475..5829596 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:57909626..57909737 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:7933856..7933969 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:145474097..145474211 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1591.1supercontigscaffold1591.1:194240..194356 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:5827536..5827652 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:6264171..6264272 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:5881662..5881778 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:5667742..5667858 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:6104550..6104666 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:5991237..5991353 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7903supercontigscaffold7903:14898..15019 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:5787193..5787314 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:6022959..6023072 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:5781135..5781256 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:5892992..5893105 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:6103905..6104019 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:5905294..5905419 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:6141178..6141294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:125307850..125307965 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:124175868..124175981 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:5600878..5600989 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908190DQ908190Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A33.4GH249View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A47.5GH249View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A63.4GH249View
Sequence
>Gh249 ID=Gh249; Name=Gh249; organism=Gossypium hirsutum; type=genetic_marker; length=117bp
ATATTGTTAAAATGAGTAATGAGGCAAAGACAAAAGCATCTATTTTCTTT
TTAATTTATACTCTCTCTCTCTCTCTCTCTCTTTGCATTCGGCATAATAC
CTTAATTAAATGCCAAC