Gh248, Gh248 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh248
Genbank ID	DQ908189
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908189
Source Type	genomic
Repeat Motif	GT(9)
Primer 1	Gh248_F: AGAACAACATGGACTTGTTTCTACG
Primer 2	Gh248_R: CACATAATATACATATATAAAACCCCAAACC
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908189

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D12	chromosome	D12:50830878..50830971 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018226.1	chromosome	CM018226.1:47441930..47442048 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Dt_chr8	chromosome	Dt_chr8:44077934..44078027 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
scaffold5136	supercontig	scaffold5136:4231..4324 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D12	chromosome	Ghir_D12:49878167..49878260 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D12	chromosome	D12:48909587..48909680 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D12	chromosome	D12:49946545..49946638 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D12	chromosome	D12:47735522..47735615 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
scaffold37102	supercontig	scaffold37102:14169..14285 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_D12	chromosome	Gbar_D12:46710430..46710548 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D12	chromosome	D12:47949607..47949725 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017712.1	chromosome	CM017712.1:48417867..48417985 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D12	chromosome	D12:49953431..49953524 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
E12	chromosome	E12:97734427..97734537 -	Gossypium stocksii (E1) genome NSF_v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908189	DQ908189	Gossypium hirsutum	sequence_feature

Sequence

>Gh248 ID=Gh248; Name=Gh248; organism=Gossypium hirsutum; type=genetic_marker; length=96bp
AGAACAACATGGACTTGTTTCTACGGGGGTTTGTGTGTGTGTGTGTGTGT
AGGTAAATGTAAAAAGGTTTGGGGTTTTATATATGTATATTATGTG

Search form

Gh248, Gh248 (genetic_marker) Gossypium hirsutum