Gh242, Gh242 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh242
Genbank IDDQ908183
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908183
Source Typegenomic
Repeat MotifGA(11)
Primer 1Gh242_F: TCCAATTGTTCTACACTTTCTCCTCA
Primer 2Gh242_R: TAACAAAAACCAGAAAACAAACGCTCGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908183
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:22575618..22575766 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:21036517..21036664 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:43731888..43732031 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:17944938..17945079 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:84517429..84517588 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:42924194..42924348 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:53468070..53468218 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold10713supercontigscaffold10713:3808..3956 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:21332440..21332588 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:20664251..20664399 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:21312456..21312604 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:21298992..21299140 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:21087158..21087305 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:20815481..20815628 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:20643748..20643893 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:21597723..21597879 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:20883602..20883769 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:21478471..21478619 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:71331008..71331175 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:22017987..22018147 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:8647375..8647528 -Gossypium gossypioides (D6) genome ISU_v1n/a
F12chromosomeF12:18325265..18325443 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908183DQ908183Gossypium hirsutumsequence_feature


Sequence
>Gh242 ID=Gh242; Name=Gh242; organism=Gossypium hirsutum; type=genetic_marker; length=149bp
TCCAATTGTTCTACACTTTCTCCTCATAATTAAAATAGGAAAATAGAAAC
TCTTGATCTCTCTTTTTTTTTTCCCTTTCTTTGAGAGAGAGAGAGAGAGA
GAGAATTTGTTTTTGTTGGTTTCGAGCGTTTGTTTTCTGGTTTTTGTTA