Gh231, Gh231 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh231
Genbank IDDQ908173
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908173
Source Typegenomic
Repeat MotifAG(8)
Primer 1Gh231_F: GAATAGTTGATAACAAAATAGAATAGCAGAA
Primer 2Gh231_R: ACGTTCACTTCCCCCACTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908173
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:41650446..41650623 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:40832184..40832367 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_01chromosomeD10_01:21759976..21760156 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:3833409..3833586 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:38933517..38933694 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:40586228..40586402 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:42544247..42544424 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:41979661..41979838 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:39484425..39484602 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At13chromosomeAt13:51002604..51002742 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22417supercontigscaffold22417:18261..19328 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17330supercontigscaffold17330:52282..52420 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:41025640..41025819 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:76367421..76367559 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:41849793..41849976 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:41854986..41855174 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:42797012..42797193 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:41193083..41193270 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:42398627..42398804 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr_02chromosomeChr_02:28542042..28542222 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:40013775..40013968 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:31279043..31279299 -Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908173DQ908173Gossypium hirsutumsequence_feature


Sequence
>Gh231 ID=Gh231; Name=Gh231; organism=Gossypium hirsutum; type=genetic_marker; length=178bp
GAATAGTTGATAACAAAATAGAATAGCAGAAACTCATAGAAGAAAAAATG
AATAAAATCAAAAATAGGAAGTTTTGGGAAAAAATAATTGAACGAAGAGA
GAGAGAGAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGGGAAGGAGA
CATGAAAGGGAGTGGGGGAAGTGAACGT