Gh226, Gh226 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh226
Genbank IDDQ908168
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908168
Source Typegenomic
Repeat MotifGAA(9)
Primer 1Gh226_F: CGATTATTCAGCATATAAACCATTTGCC
Primer 2Gh226_R: CTTTACTAAAGGATTATCATCAGGTCAG
Publication[view all]
ContactLin, Zhong-Xu
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Contact
NameDetails
Lin, Zhong-Xu
First name:Zhong-Xu
Last name:Lin
Address:shizishan 1, wuhan, hubei 430070
Country:China
Email:linzhongxu@mail.hzau.edu.cn
Phone:+86 027 87283955
Last update:5-Mar-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908168
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:64788856..64788954 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:61430120..61430215 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:7357620..7357724 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold4600.1supercontigscaffold4600.1:27724..27819 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold326.1supercontigscaffold326.1:513731..513826 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4717supercontigscaffold4717:207503..207601 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:64236255..64236353 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D11chromosomeGhir_D11:64182220..64182282 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:114410931..114411017 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:114360893..114360957 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:63329285..63329383 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:64066693..64066788 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:61450541..61450639 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold26803supercontigscaffold26803:19568..19654 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold26803supercontigscaffold26803:18459..18545 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2409supercontigscaffold2409:293157..293252 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:60920412..60920507 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:104519787..104519873 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:104564014..104564078 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:63846773..63846868 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017659.1chromosomeCM017659.1:65186607..65186702 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D11chromosomeD11:64013089..64013187 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:32985404..32985741 +Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:103961120..103961212 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908168DQ908168Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch25_Dt.06N/A57.83GhIDP226View
Sequence
>Gh226 ID=Gh226; Name=Gh226; organism=Gossypium hirsutum; type=genetic_marker; length=99bp
CGATTATTCAGCATATAAACCATTTGCCACATTTAAGATATATGAAGAAG
AAGAAGAAGAAGAAGAAGAAGCTGACCTGATGATAATCCTTTAGTAAAG