Gh219, Gh219 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh219
Genbank IDDQ908161
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908161
Source Typegenomic
Repeat MotifCA(10)
Primer 1Gh219_F: TACATTTATTAGACCATAGAGAATGGAGA
Primer 2Gh219_R: CATTATCATCACGCTTAAGAGTAACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908161
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:3553413..3553538 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:3908950..3909074 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:3873411..3873540 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A07chromosomeA07:3036417..3036542 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:3660497..3660606 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:3838571..3838695 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:3599556..3599681 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:3824217..3824342 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:3857507..3857632 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:2846189..2846313 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12080supercontigscaffold12080:50866..50990 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5776supercontigscaffold5776:272228..272337 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:3618324..3618433 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:3883442..3883566 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:3775140..3775264 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:3662714..3662838 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:3801225..3801349 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:3847633..3847757 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:3854150..3854275 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:3883237..3883366 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:3849264..3849392 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F07chromosomeF07:3473117..3473240 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908161DQ908161Gossypium hirsutumsequence_feature


Sequence
>Gh219 ID=Gh219; Name=Gh219; organism=Gossypium hirsutum; type=genetic_marker; length=126bp
TACATTTATTAGACCATAGAGAATGGAGAAAATTTCATTATTAATTAATT
TTGATGATGATGCACACACACACACACACACAAAAAAAGCAAAAGAAGCT
GGTTACTCTTAAGCGTGATGATAATG