Gh218, Gh218 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh218
Genbank IDDQ908160
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908160
Source Typegenomic
Repeat MotifTC(14)
Primer 1Gh218_F: ACCCCTTTTGCCTTTATTGCTTGC
Primer 2Gh218_R: CAAATCCAAGATGACAAACACACGTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908160
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:41150734..41150867 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:68748137..68748278 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:38975037..38975170 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:64290234..64290379 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:32786526..32786657 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:30002781..30002910 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:71265923..71266059 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:10781674..10781807 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:17051151..17051282 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:10666446..10666579 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:52411586..52411727 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:39030184..39030317 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:63822599..63822740 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:40991841..40991974 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:68531570..68531711 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:40673521..40673654 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:70282057..70282198 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:40749334..40749467 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:70263122..70263263 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:38820313..38820446 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:67182432..67182573 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:66280839..66280984 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1340supercontigscaffold1340:274014..274159 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:39664510..39664643 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:64702702..64702847 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:42112534..42112667 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:66198938..66199083 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:39877867..39878000 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:66120519..66120680 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:41271471..41271602 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:69026325..69026458 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:40451258..40451391 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:66144931..66145097 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:42455019..42455152 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:71637872..71638013 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:70489232..70489385 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:73717183..73717319 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:39018887..39019018 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:57905485..57905614 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:39400772..39400919 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:32374486..32374763 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:27123390..27123535 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:40805441..40805574 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:29853196..29853327 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:22370311..22370446 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:27522086..27522215 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:15021603..15021744 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:58959259..58959394 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:114937923..114938052 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908160DQ908160Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A102GH218View
Sequence
>Gh218 ID=Gh218; Name=Gh218; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
ACCCCTTTTGCCTTTATTGCTTGCTTGGAAAATATCTATTTCTCATTCTC
ATTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTATGAACCAGTTTA
TATTTATATAGATTCACGTGTGTTTGTCATCTTGGATTTG