Gh213, Gh213 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh213
Genbank IDDQ908155
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908155
Source Typegenomic
Repeat MotifTC(18)
Primer 1Gh213_F: GTTCTTATTCTGCTACTGTCTCCG
Primer 2Gh213_R: CGCTCTTCATATTTCATTTCACAAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908155
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:42417426..42417569 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:40225846..40225986 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_09chromosomeD10_09:9720538..9720673 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:15009162..15009327 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold326.1supercontigscaffold326.1:1282936..1283080 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:7745319..7745463 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:40194133..40194300 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:42263923..42264065 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:41838388..41838532 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:41994625..41994767 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:40094576..40094723 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:40910265..40910404 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:43367536..43367829 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:41105841..41106016 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:42505685..42505813 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:41706673..41706821 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:43697840..43697981 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:40630738..40630865 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:33480680..33480880 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:27984148..27984367 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:41975243..41975382 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:30869483..30869695 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeGh213:1..515 .
Chr06:41268890..41269384 +		n/a
Chr6chromosomeGh213:1..515 .
Chr6:32067275..32067769 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908155DQ908155Gossypium hirsutumsequence_feature


Sequence
>Gh213 ID=Gh213; Name=Gh213; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
GTTCTTATTCTGCTACTGTCTCCGTTTGAATTTGATTCGTTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTTCGTTTTTTCGGGGCGG
GGGGGGGGACTTTGTTTATGCTTGTGAAATGAAATATGAAGAGCG