Gh212, Gh212 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh212
Genbank IDDQ908154
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908154
Source Typegenomic
Repeat MotifGAA(8
Primer 1Gh212_F: AGAAACGTCAAGCCGAGGACAG
Primer 2Gh212_R: CTCAAAAAACTTGTTTACCTAACATTCAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908154
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:65439562..65439749 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:119586149..119586285 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:61624776..61624963 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:114593707..114593846 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:57737469..57737659 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:36360388..36360587 -Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:124624540..124624673 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:5656465..5656650 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:11010612..11010799 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:52807699..52807835 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:62188235..62188422 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:99695663..99695799 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:64576712..64576899 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:118100060..118100196 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:64983757..64983944 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:120755284..120755420 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:64431797..64431984 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:120937753..120937886 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:61722647..61722834 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:116665344..116665480 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:64571259..64571446 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9126supercontigscaffold9126:20414..20601 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20537supercontigscaffold20537:120774..120913 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:61739722..61739909 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:115253561..115253700 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:63552701..63552888 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:116229204..116229343 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:63359020..63359207 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:114839699..114839835 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:65471304..65471488 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:124336017..124336153 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:62065313..62065500 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:115419368..115419510 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:65217775..65217962 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:122834163..122834299 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:127124765..127124898 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:128074748..128074881 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:58649480..58649670 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:99768914..99769107 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:60166731..60166918 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:62519676..62519863 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E08chromosomeE08:117377025..117377218 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:100774496..100774686 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:5760611..5760798 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeGh212:1..565 .
Chr04:58227600..58228238 -		n/a
Chr4chromosomeGh212:1..565 .
Chr4:2605321..2605959 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908154DQ908154Gossypium hirsutumsequence_feature


Sequence
>Gh212 ID=Gh212; Name=Gh212; organism=Gossypium hirsutum; type=genetic_marker; length=137bp
AGAAACGTCAAGCCGAGGACAGTGGGGAGAATGTTGAAGGAGAGGAGGAG
GAGAAGAAGAAGAAGAAGAAGAAGAAAAGTGGTGATTGAGAAAACAAGAA
AATTTTTGTTGAATGTTAGGTAAACAAGTTTTTTGAG