Gh206, Gh206 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh206
Genbank IDDQ908148
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908148
Source Typegenomic
Repeat MotifGA(11)
Primer 1Gh206_F: AAGAGAGCGAAGGTGGAATATCAG
Primer 2Gh206_R: CAACTCACCATTGTAAATACTAATACGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908148
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:108395544..108395640 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:135336985..135337084 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:539195..539295 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2142.1supercontigscaffold2142.1:281737..281833 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:99969620..99969716 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:69474609..69474690 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:112713683..112713779 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:111300793..111300889 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:109814874..109814970 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:105086425..105086521 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt02chromosomeDt02:70833501..70833582 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt02chromosomeDt02:70831436..70831517 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15633supercontigscaffold15633:4033..4114 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15633supercontigscaffold15633:1968..2049 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold29982supercontigscaffold29982:247145..247239 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold29982supercontigscaffold29982:241755..241849 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:67340309..67340390 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:105040252..105040346 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:107342319..107342413 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:106645568..106645662 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:113792496..113792591 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:107767278..107767372 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:113411315..113411411 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:229217..229313 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:369617..369716 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:65794697..65794786 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:50458343..50458548 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:43426344..43426437 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:67354281..67354376 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F03chromosomeF03:109920285..109920377 +Gossypium longicalyx (F1) genome NSF_v1n/a
F03chromosomeF03:109916526..109916788 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908148DQ908148Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A170.47Gh206View
2Emian-22 x 3-79, BC1 (2015)AD_ch05_At.05N/A210.4Gh206View
Sequence
>Gh206 ID=Gh206; Name=Gh206; organism=Gossypium hirsutum; type=genetic_marker; length=97bp
AAGAGAGCGAAGGTGGAATATCAGTCGAGAAAAAAAGAGAGAGAGAGAGA
GAGAGAGATAGAGGAAGAAGCGTATTAGTATTTACAATGGTGAGTTG