Gh204, Gh204 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh204
Genbank IDDQ908146
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908146
Source Typegenomic
Repeat MotifGA(12)
Primer 1Gh204_F: CATACAAACAGATACAAAGCAACATG
Primer 2Gh204_R: CGAAGTCTGATAAGCTGAGGCA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908146
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:4201118..4201245 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:4226038..4226157 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:4471887..4472022 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:58311589..58311702 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:138530755..138530870 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold417.1supercontigscaffold417.1:1130674..1130801 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:3731750..3731877 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:4221858..4221968 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:4186973..4187100 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:4276876..4277003 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:4580638..4580764 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:4162242..4162369 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At08chromosomeAt08:3790407..3790517 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1102supercontigscaffold1102:261596..261706 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11030supercontigscaffold11030:137471..137581 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:4161428..4161538 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:4553156..4553273 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:4396625..4396744 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:4446910..4447025 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:4596341..4596470 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:4370339..4370464 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:4630108..4630235 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:4535725..4535856 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:4812816..4812951 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:4816585..4816708 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr_04chromosomeChr_04:3423966..3424079 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:3974353..3974480 -Gossypium aridum (D4) genome ISU_v1n/a
E08chromosomeE08:5883000..5883117 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:3814155..3814284 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:193014216..193014345 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908146DQ908146Gossypium hirsutumsequence_feature


Sequence
>Gh204 ID=Gh204; Name=Gh204; organism=Gossypium hirsutum; type=genetic_marker; length=129bp
CATACAAACAGATACAAAGCAACATGCACACACATAAAGACATGCATGTA
TAAGAGATATGTGACAGGGAGAGAGANGAGAGAGAGAGAGAGAGAGAGAG
AGACCACTGCCTCAGCTTATCAGACTTCG