Gh196, Gh196 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh196
Genbank IDDQ908138
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908138
Source Typegenomic
Repeat MotifCCT(7)
Primer 1Gh196_F: CAATTCACATGACTTCCTTAGTTCC
Primer 2Gh196_R: CACCTGGTTTCTTCGCG
Publication[view all]
ContactLin, Zhong-Xu
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Contact
NameDetails
Lin, Zhong-Xu
First name:Zhong-Xu
Last name:Lin
Address:shizishan 1, wuhan, hubei 430070
Country:China
Email:linzhongxu@mail.hzau.edu.cn
Phone:+86 027 87283955
Last update:5-Mar-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908138
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:31201885..31202092 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:57763654..57763867 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:29519129..29519348 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:59778002..59778215 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:32769447..32769666 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:76386619..76386831 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:33737041..33737257 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:66807165..66807366 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:28692647..28692854 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:86839921..86840134 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:86825726..86825939 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:29958646..29958853 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:50662679..50662892 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:29809991..29810198 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:63199960..63200173 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:29002858..29003065 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:64863969..64864182 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:29981575..29981782 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:62938254..62938467 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:29960497..29960704 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:58628156..58628369 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:52581521..52581734 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At10chromosomeAt10:52580502..52580721 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7973supercontigscaffold7973:435262..435481 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1070supercontigscaffold1070:76245..76458 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1070supercontigscaffold1070:75226..75445 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:29387023..29387242 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:60145261..60145474 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:29748047..29748269 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:61702270..61702483 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:29459224..29459440 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:60777977..60778190 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:30091739..30091946 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:65895215..65895428 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:30153072..30153288 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:62723995..62724208 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:30129564..30129771 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:65952395..65952608 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:26784027..26784240 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:50841839..50842052 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:29414517..29414736 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:55915406..55915616 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:35944464..35944680 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:25697040..25697250 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:20965357..20965573 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:30278872..30279088 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:17664248..17664449 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:22709490..22709691 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:62555785..62555986 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:41970154..41970394 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:79854670..79854865 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908138DQ908138Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch11_At.11N/A42.96Gr-Gh196View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A82.5GH196View
Sequence
>Gh196 ID=Gh196; Name=Gh196; organism=Gossypium hirsutum; type=genetic_marker; length=214bp
CAATTCACATGACTTCCTTAGTTCCTCTCTCCTTCAACCCTCCTTTTCTC
CACTCTCATTCTCATTCCTTTTCTTCCAAACCCTCCTCCCTCTCTCCTTC
CCCTTCCAATCTCTTCGTCTGCTTCTTCTCCTCTTCTCCTCCTCCTCCTC
CTCCTCCTTCTTCTTCTTCTTCTTCACATAATTCCTCAAATTTCGACCGC
GAAGAAACCAGGTG