Gh194, Gh194 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh194
Genbank IDDQ908136
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908136
Source Typegenomic
Repeat MotifCTT(5)
Primer 1Gh194_F: TGAATCGCAGCCTCCATC
Primer 2Gh194_R: CTCTTCCCTTTGTTTTCGATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908136
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:76646299..76646453 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:71802569..71802717 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:79241902..79242050 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:4752367..4752506 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:7006521..7006672 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:7334230..7334384 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:70620100..70620254 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:76303709..76303863 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:77730086..77730240 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:77827475..77827629 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:74709811..74709965 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6863supercontigscaffold6863:17643..17791 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:72419510..72419658 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:73849560..73849708 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:73794947..73795095 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:48087266..48087414 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:76741264..76741412 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:73949926..73950074 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:79615838..79615992 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:78775533..78775681 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:81570003..81570151 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:65315307..65315455 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:45991638..45991783 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:38052546..38052685 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:31896292..31896431 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:47114727..47114872 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:35261192..35261328 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:32657784..32657928 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:6324268..6324399 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:65926006..65926151 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908136DQ908136Gossypium hirsutumsequence_feature


Sequence
>Gh194 ID=Gh194; Name=Gh194; organism=Gossypium hirsutum; type=genetic_marker; length=155bp
TGAATCGCAGCCTCCATCGTCAGCACTTATTTTCACCTTATCCATCGAAG
GTTCATCATCCCTTTCACCATCAGTCAATGCTTTATAATCTAGATCTTCA
TCTTCTTCTTCTTCTTCATCATCATCATCATCATCATCGAAAACAAAGGG
AAGAG