Gh192, Gh192 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh192
Genbank IDDQ908134
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908134
Source Typegenomic
Repeat MotifCTT(9)
Primer 1Gh192_F: GATCACTTAATGATTCTCACGTCC
Primer 2Gh192_R: GCTTAAGGATGTCTAGGGTGCA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908134
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:16323539..16323769 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:20425647..20425862 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:15652784..15653006 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:20291522..20291738 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:19174050..19174270 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr1chromosomeDt_chr1:48136744..48136974 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:35076762..35076977 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:15720909..15721139 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:19449311..19449526 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:16091498..16091728 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:20587832..20588047 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:15432922..15433152 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:19690319..19690534 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:16061557..16061787 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:20630001..20630215 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:15630812..15631042 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:20335363..20335578 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:21399916..21400132 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12982supercontigscaffold12982:15794..16010 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:16074615..16074837 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:20240628..20240844 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:15716831..15717053 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:20274777..20274993 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:16052391..16052620 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:20178801..20179018 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:16302161..16302386 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:20237897..20238111 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:16000764..16001016 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:20565493..20565710 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:16288753..16288983 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:20794079..20794294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:21187719..21187938 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:38118863..38119093 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:20507817..20508044 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:15854552..15854773 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:12673666..12673986 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:15637917..15638133 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:12667045..12667375 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:10032605..10032827 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:12365404..12365638 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:69866066..69866280 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:18538332..18538551 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:37654706..37654918 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908134DQ908134Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A0Gh192View
Sequence
>Gh192 ID=Gh192; Name=Gh192; organism=Gossypium hirsutum; type=genetic_marker; length=228bp
GATCACTTAATGATTCTCACGTCCAACATTTTACCCCATTTTCTTTCAAC
TTGAGAAAAGAAAAATCTTTTTTTTTTATTGGCAGCCATGACGGAGGTCC
TTCATTTCTCTTCACCTCCAAGCGCTGAGAATTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTACTACGTCTGACGATGATGATGATGATGAAGGTGCGTT
ATCCTGTGCACCCTAGACATCCTTAAGC