Gh191, Gh191 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh191
Genbank IDDQ908133
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908133
Source Typegenomic
Repeat MotifCA(12)
Primer 1Gh191_F: GCAACATCTCACACAAAATTCG
Primer 2Gh191_R: TCCGTATTATATGCGCATGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908133
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:40129244..40129447 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:28857121..28857324 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:27214181..27214382 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_10chromosomeD10_10:36444516..36444729 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:26331500..26331703 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:27605716..27605919 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:27491918..27492121 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:26725047..26725250 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:27655082..27655285 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:27621479..27621682 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold521supercontigscaffold521:350014..350215 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold521supercontigscaffold521:346106..346307 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:27143029..27143230 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:27398635..27398836 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:26603863..26604072 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:27150721..27150934 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:27686619..27686858 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:27765488..27765681 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:27822758..27822961 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:38524370..38524577 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:27756104..27756335 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:22878071..22878272 +Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908133DQ908133Gossypium hirsutumsequence_feature


Sequence
>Gh191 ID=Gh191; Name=Gh191; organism=Gossypium hirsutum; type=genetic_marker; length=204bp
GCAACATCTCACACAAAATTCGGTTAAGACCAAAAGATATCAACTAGACA
CTTGACTTGACTCACACGCAGATCATATAAACATACTATGTCACACACAT
ACACACACACACACACACGCACAACACTTAAGATCAAACAACATACTTAT
GATAGAAAACAACAACATGAAAATGACAAACACCCCATGCGCATATAATA
CGGA